When Doremi, Hazuki, Aiko, and Onpu travel to the Witch World to visit Majo Rika, they inadvertently walk into the Queen's garden and encounter a baby born from a special rose. They are given their powers back and are asked to take care of the newborn for a year.

At the new Flower Garden MAHO Dou, the girls are both making preparations for the grand opening and taking care of Hana at the same time. Luckily, Doremi's mother comes by and properly instructs them on how to take care of Hana.

With the announcement of a Level 9 Exam for new witch apprentices. Pop decides to take care of Hana for the night to prepare herself.

Although Doremi uses her magic to get two quarreling friends to make up, her deed causes Hana to become ill.

When the girls see the iconic ivy of Miss Seki's old high school wilting, they do all they can to fix it in time for the graduation ceremony.

Takao Kimura won't admit his crush on Marina Koizumi in front of the SOS Trio, and his stubborn action causes a rift to form between them.

Just like their witch apprentice exams from before, Hana must undergo monthly health examinations, with the first one coming up very shortly. During the exam, the girls go to great lengths to make sure Hana passes or else they will never she her again.

Onpu and her friends use the power of Magical Stage to find out why her mother will not allow her to perform at a venue.

Majo Rika and the girls go on a trip to find a certain herb that Hana needs to cure her hiccups and come across Majo Rika's mother, Majo Ririka.

Nobuko has written a new story about Aiko and her friends, and the others take turns inputting their own bit into the story.

Reiko Fujiwara wants her daughter to learn traditional Japanese dance, but Hazuki can't say no to her mother's request.

The day of the second health examination has arrived, and the girls must try their best to complete tasks without accumulating three yellow cards, which will fail them immediately.

Sebastian Shinzou Osawa, son of one of the sponsors of Onpu's event, asks Doremi to marry him, to which she obviously accepts.

Pop grows affection for her new P.E. teacher, Mr. Jyunichi.

Shiori, who is motherless, and Masaru, who doesn't care much for his, decide to skip school after being asked to draw them as an art project.

Doremi and Pop take Hana home to give Majo Rika and Lala a break, but the baby's newly discovered crawling ability makes things very difficult.

Conveniently enough, the third health examination challenges the baby's ability to crawl.

Dodo rebels and once again flies away when Doremi works her too hard.

Doremi and Hazuki argue about how to properly take care of Hana, but any attempt of getting the two to make up only makes things worse.

Aiko's mother invites her daughter to stay with her for the night, where she learns more about what led to the divorce.

After easily passing the fourth health examination, Majo Heart asks the girls to retrieve lavender from the human-hating CFO of the Witch World, Majo Don.

With the passage between the Witch and Wizard Worlds now opened, Oyajiide is tasked with capturing Hana.

After failing to get Hana from the clutches of Oyajiide, the Queen grants them access to more powerful magic to be used when the baby is in danger.

Kotake and Kimura want to enter a sumo tournament to win a video game and get the fried bread-loving Susumu Yanagita to join them.

A young wizard named Akatsuki is sent out to aid Oyajiide's kidnapping efforts and decides to use Doremi to get to Hana.

Since her swimsuit from last year no longer fits, Kanae Iida decides to go on a diet and asks Doremi for help. Coincidentally, the next Health Examination for Hana checks the baby's appetite.

Majo Ririka comes for a visit, and everyone goes to Hokkaido to find magic marigolds to cure Hana's rash. While there, they come across Doremi's father fishing with an unknown woman.

Oyajiide sneaks into the next health examination to once again capture the infant.

Once again the class, this time with Tamaki, make a trip to Yamauchi's temple to test their courage.

Miss Seki has gotten a boyfriend over the summer, so Doremi and the others try to find out just how great a person he is.

Fujio, Leon, and Tooru, three more young wizards, join Akatsuki (together known as the FLAT 4) and Oyajiide in their question to retrieve the magic baby, while the girls prepare for the seventh health examination.

While Dodo and the other fairies become trapped and transform in the new laptop given to the girls by the Queen, the FLAT 4 successfully kidnap Hana and put the blame on the unknowing Oyajiide. There is profanity in the episode when one of the man holding an anpan says "Damn."

On a school trip, Kaori takes charge of taking pictures, but she goes overboard and produces some embarrassing photos of everyone.

Aiko and Onpu argue with each other after Aiko misunderstands the importance of the idol's feelings.

The kindergardeners are preparing for the athletic meet. During practice, it's revealed that Kimitaka has a few cooperation and balance problems.

The athletic Leon of the FLAT 4 challenges Aiko to all sorts of sports, while Hana wanders off chasing a dragonfly.

Hana's next health examination and Pop's Level 4 apprentice test occur at the same time. Hana's actions begin to affect Pop's test.

Hazuki is chosen to direct the class play for the talent show, but encounters difficulties when she is unable to make her own decisions.

After Hana passes another health examination, Doremi, Hazuki, and Aiko go to see Onpu's filming in Kyoto. The kid who plays Onpu's brother, Chikara, gets jealous of Onpu spending more time with Doremi and the others.

After the events of the Sharp movie, Pop asks her mother to teach her how to play the piano.

Tooru tries to become an idol like Onpu, but fails in every way. Oyajiide attempts another kidnapping.

Majo Heart is revealed to have an adopted daughter, Majo Ran. Majo Ran refuses to use magic, and is trying to get to the Queen's castle.

Because Majo Rika and Lala are ill, the girls take Hana to school.

The girls get to spend time with their families on Christmas Eve. Although there are happy times, there are sad times as well.

The girls go into a Storybook world, with the characters portrayed by notable people during the season.

During the final Health Exam, the girls are taken away by the FLAT 4. Their thoughts are clouded, yet they carry out their duty of kidnapping Hana. Can Doremi get through to them?

It's the girls against Oyajiide and Ojijide as they race against the clock for the fate of the Witch and Wizard worlds and Hana.

Picking up from the last episode, the past Queen of the Witch World curses Hana, making her very ill. There is an only thing that can cure her, the Love Supreme flower in a cursed forest, but if she isn't cured, Hana will die.

The four witch apprentices go in to the forest and retrieve the Love Supreme flower, however the previous queen tries to stop them. Doremi finally gets the flower and Hana is saved, but they fall asleep for 1000 years. Hana calls out to them, which awakens her mothers. When they saved Hana, their crystals break. They can't see Hana again because of this, and they part ways.